Protein Sequence Corpora Synthyra/human_proteome Viewer • Updated Feb 11, 2025 • 102k • 79 Synthyra/og_prot90 Viewer • Updated Jul 3, 2025 • 85M • 47 Synthyra/og_prot90_packed Updated 30 days ago • 86 Synthyra/ProteinSelfies Viewer • Updated Sep 10, 2025 • 9.92M • 2.47k
Annotation Vocabulary Synthyra/ESMC-6B-SAE-Annotation-Vocabulary-Features Viewer • Updated Aug 27 • 105k • 52 Synthyra/SwissProt-AV-SAE-Compare Viewer • Updated Aug 26 • 1.99M • 125 • 1
Protein-Protein Affinity Synthyra/AffinityBenchmarkv5.5 Viewer • Updated Mar 4, 2025 • 162 • 10 Synthyra/ppi_affinity Viewer • Updated Sep 15, 2025 • 11k • 15 Synthyra/ProteinProteinAffinity Viewer • Updated Mar 17, 2025 • 11.1k • 27
PLI Datasets Datasets related to Protein-Ligand (small molecule) Interactions Synthyra/PLINDER Viewer • Updated Jan 23 • 428k • 73 Synthyra/PLINDER-selfies Viewer • Updated Jan 23 • 94.3k • 14
PPI Datasets Datasets related to protein-protein interaction, binding sites, or binding affinity. Synthyra/NEGATOME Viewer • Updated Jan 15 • 24.2k • 65 • 1 Synthyra/StringDBSeqsv12 Viewer • Updated Dec 5, 2024 • 59.3M • 55 • 1 Synthyra/Stringv12ModelOrgSeqs Viewer • Updated Apr 29, 2025 • 361k • 6 Synthyra/homodimer_benchmark Viewer • Updated Dec 13, 2024 • 164k • 46
FastPLMs Synthyra/ESMplusplus_small Fill-Mask • 0.3B • Updated 23 days ago • 3.7k • 20 Synthyra/ESMplusplus_large Fill-Mask • 0.6B • Updated 23 days ago • 1.02k • 19 Synthyra/FastESM2_650 Fill-Mask • 0.7B • Updated 30 days ago • 417 • 3 Synthyra/ANKH_base 0.7B • Updated 23 days ago • 314
Protein Embeddings Synthyra/canonical_embedding_sequences Viewer • Updated 12 days ago • 3.57M • 247 GleghornLab/vec2vec_embeddings Updated about 17 hours ago • 72 Synthyra/vector_embeddings Updated 30 days ago • 31
Structure Prediction lhallee/AtlasFold-Data Viewer • Updated 24 days ago • 36.6M • 2.63k Synthyra/PDB-Monomeric-Structure-ESMFold2 Viewer • Updated Jul 9 • 148k • 112 Synthyra/Boltz2 Feature Extraction • 0.5B • Updated 23 days ago • 418 • 1 Synthyra/ESMFold2 Feature Extraction • 0.2B • Updated 23 days ago • 1.17k
Atlas PLI Synthyra/FDA-Approved-Drugs Viewer • Updated May 7 • 3.48k • 67 Synthyra/PLINDER Viewer • Updated Jan 23 • 428k • 73 Synthyra/PLINDER-selfies Viewer • Updated Jan 23 • 94.3k • 14
Vec2Vec GleghornLab/vec2vec_embeddings Updated about 17 hours ago • 72 Synthyra/vector_embeddings Updated 30 days ago • 31
Speedrunning ESM2 Synthyra/esm150_speedrun_20000_steps 0.1B • Updated 30 days ago • 12 Synthyra/esm_speedrun 31.6M • Updated Jan 3, 2025 • 21
Protein Sequence Corpora Synthyra/human_proteome Viewer • Updated Feb 11, 2025 • 102k • 79 Synthyra/og_prot90 Viewer • Updated Jul 3, 2025 • 85M • 47 Synthyra/og_prot90_packed Updated 30 days ago • 86 Synthyra/ProteinSelfies Viewer • Updated Sep 10, 2025 • 9.92M • 2.47k
Protein Embeddings Synthyra/canonical_embedding_sequences Viewer • Updated 12 days ago • 3.57M • 247 GleghornLab/vec2vec_embeddings Updated about 17 hours ago • 72 Synthyra/vector_embeddings Updated 30 days ago • 31
Annotation Vocabulary Synthyra/ESMC-6B-SAE-Annotation-Vocabulary-Features Viewer • Updated Aug 27 • 105k • 52 Synthyra/SwissProt-AV-SAE-Compare Viewer • Updated Aug 26 • 1.99M • 125 • 1
Structure Prediction lhallee/AtlasFold-Data Viewer • Updated 24 days ago • 36.6M • 2.63k Synthyra/PDB-Monomeric-Structure-ESMFold2 Viewer • Updated Jul 9 • 148k • 112 Synthyra/Boltz2 Feature Extraction • 0.5B • Updated 23 days ago • 418 • 1 Synthyra/ESMFold2 Feature Extraction • 0.2B • Updated 23 days ago • 1.17k
Protein-Protein Affinity Synthyra/AffinityBenchmarkv5.5 Viewer • Updated Mar 4, 2025 • 162 • 10 Synthyra/ppi_affinity Viewer • Updated Sep 15, 2025 • 11k • 15 Synthyra/ProteinProteinAffinity Viewer • Updated Mar 17, 2025 • 11.1k • 27
Atlas PLI Synthyra/FDA-Approved-Drugs Viewer • Updated May 7 • 3.48k • 67 Synthyra/PLINDER Viewer • Updated Jan 23 • 428k • 73 Synthyra/PLINDER-selfies Viewer • Updated Jan 23 • 94.3k • 14
PLI Datasets Datasets related to Protein-Ligand (small molecule) Interactions Synthyra/PLINDER Viewer • Updated Jan 23 • 428k • 73 Synthyra/PLINDER-selfies Viewer • Updated Jan 23 • 94.3k • 14
Vec2Vec GleghornLab/vec2vec_embeddings Updated about 17 hours ago • 72 Synthyra/vector_embeddings Updated 30 days ago • 31
PPI Datasets Datasets related to protein-protein interaction, binding sites, or binding affinity. Synthyra/NEGATOME Viewer • Updated Jan 15 • 24.2k • 65 • 1 Synthyra/StringDBSeqsv12 Viewer • Updated Dec 5, 2024 • 59.3M • 55 • 1 Synthyra/Stringv12ModelOrgSeqs Viewer • Updated Apr 29, 2025 • 361k • 6 Synthyra/homodimer_benchmark Viewer • Updated Dec 13, 2024 • 164k • 46
Speedrunning ESM2 Synthyra/esm150_speedrun_20000_steps 0.1B • Updated 30 days ago • 12 Synthyra/esm_speedrun 31.6M • Updated Jan 3, 2025 • 21
FastPLMs Synthyra/ESMplusplus_small Fill-Mask • 0.3B • Updated 23 days ago • 3.7k • 20 Synthyra/ESMplusplus_large Fill-Mask • 0.6B • Updated 23 days ago • 1.02k • 19 Synthyra/FastESM2_650 Fill-Mask • 0.7B • Updated 30 days ago • 417 • 3 Synthyra/ANKH_base 0.7B • Updated 23 days ago • 314
